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The book / sources

Every sourcethe book cites.

Every paper, post, spec and tool referenced in the manuscript, grouped by the chapter that cites it. The list is generated from the manuscript itself, so it is what the book actually points at — not a bibliography kept by hand next to it.

  • 181 links
  • 107 sources
  • 11 chapters
01 / jump to a chapter11 chapters · 181 links
  1. 01The AI-Native Engineer7
  2. 02From LLMs to Agents31
  3. 03Context Engineering Fundamentals17
  4. 04Model Context Protocol19
  5. 05Spec-Driven Development2
  6. 06The SDD Workflow6
  7. 07SDD Frameworks Compared14
  8. 08Verification and Quality Gates55
  9. 09Agent Orchestration Patterns14
  10. 10Scaling AI-Native Engineering in Teams15
  11. 11AI-Native in Practice at Cogwheel1
02 / every linkin full, nothing folded
01The AI-Native Engineer7 links
  1. 01addyo.substack.com/p/the-ai-native-software-engineer
  2. 02en.wikipedia.org/wiki/Jevons_paradox
  3. 03loige.co/the-senior-dev/
  4. 04martinfowler.com/articles/harness-engineering.html
  5. 05openai.com/index/harness-engineering/
  6. 06www.youtube.com/watch?v=vif8NQcjVf0&t=7262
  7. 07x.com/Vtrivedy10/status/2031408954517971368
02From LLMs to Agents31 links
  1. 01aider.chat/
  2. 02artificialanalysis.ai/
  3. 03arxiv.org/abs/1706.03762
  4. 04arxiv.org/abs/2210.03629
  5. 05arxiv.org/abs/2307.03172
  6. 06arxiv.org/abs/2402.03300
  7. 07arxiv.org/abs/2404.06654
  8. 08arxiv.org/abs/2406.16264
  9. 09arxiv.org/abs/2501.12948
  10. 10bolt.new/
  11. 11claude.ai/design
  12. 12claude.com/product/claude-code
  13. 13cursor.com/
  14. 14cursor.com/docs/cloud-agent
  15. 15devin.ai/
  16. 16docs.github.com/en/copilot/concepts/agents/cloud-agent/about-cloud-agent
  17. 17en.wikipedia.org/wiki/Goodhart%27s_law
  18. 18github.com/features/copilot
  19. 19github.com/google-gemini/gemini-cli
  20. 20github.com/openai/codex
  21. 21graphite.com/
  22. 22huggingface.co/blog/tiny-agents
  23. 23lovable.dev/
  24. 24openai.com/codex/
  25. 25openreview.net/forum?id=pwIGnH2LHJ
  26. 26v0.app/
  27. 27www.anthropic.com/engineering/building-effective-agents
  28. 28www.coderabbit.ai/
  29. 29www.figma.com/make/
  30. 30www.greptile.com/
  31. 31zed.dev/
03Context Engineering Fundamentals17 links
  1. 01agents.md/
  2. 02agentskills.io/home
  3. 03arxiv.org/abs/1706.03762
  4. 04arxiv.org/abs/2307.03172
  5. 05arxiv.org/abs/2602.11988
  6. 06arxiv.org/pdf/2306.15595
  7. 07code.claude.com/docs/en/best-practices
  8. 08github.blog/ai-and-ml/github-copilot/how-to-write-a-great-agents-md-lessons-from-over-2500-repositories/
  9. 09langserver.org/
  10. 10learn.chatgpt.com/docs/agent-configuration/agents-md
  11. 11openreview.net/forum?id=R6q67CDBCH
  12. 12platform.claude.com/docs/en/agents-and-tools/agent-skills/best-practices
  13. 13pmc.ncbi.nlm.nih.gov/articles/PMC2864034/
  14. 14tessl.io/
  15. 15www.anthropic.com/engineering/effective-context-engineering-for-ai-agents
  16. 16www.skills.sh/
  17. 17www.trychroma.com/research/context-rot
04Model Context Protocol19 links
  1. 01arxiv.org/pdf/2506.13538
  2. 02docs.github.com/en/copilot/how-tos/administer-copilot/manage-mcp-usage/configure-mcp-registry
  3. 03github.com/HKUDS/CLI-Anything
  4. 04github.com/PrefectHQ/fastmcp
  5. 05github.com/punkpeye/awesome-mcp-servers
  6. 06invariantlabs.ai/blog/mcp-github-vulnerability
  7. 07invariantlabs.ai/blog/mcp-security-notification-tool-poisoning-attacks
  8. 08mcp.so
  9. 09microsoft.github.io/language-server-protocol/
  10. 10modelcontextprotocol.io/docs/2026-07-28/sdk
  11. 11modelcontextprotocol.io/docs/2026-07-28/tools/inspector
  12. 12modelcontextprotocol.io/specification/2026-07-28
  13. 13owasp.org/www-project-mcp-top-10/
  14. 14registry.modelcontextprotocol.io
  15. 15www.anthropic.com/engineering/advanced-tool-use
  16. 16www.anthropic.com/engineering/code-execution-with-mcp
  17. 17www.cs.virginia.edu/~evans/cs551/saltzer/
  18. 18www.docker.com/blog/docker-mcp-ai-agent-developer-setup/
  19. 19www.microsoft.com/en-us/research/blog/tool-space-interference-in-the-mcp-era-designing-for-agent-compatibility-at-scale/
05Spec-Driven Development2 links
  1. 01arxiv.org/abs/2411.01414
  2. 02mapsworkshop.github.io/assets/LLM_Code_Error_Analysis_MAPS2023_camera-ready.pdf
06The SDD Workflow6 links
  1. 01en.wikipedia.org/wiki/Characterization_test
  2. 02en.wikipedia.org/wiki/Test-driven_development
  3. 03github.com/architecture-decision-record/architecture-decision-record
  4. 04martinfowler.com/articles/continuousIntegration.html
  5. 05martinfowler.com/articles/feature-toggles.html
  6. 06www.extremeprogramming.org/rules/spike.html
07SDD Frameworks Compared14 links
  1. 01alistairmavin.com/ears/
  2. 02developer.microsoft.com/blog/spec-driven-development-spec-kit
  3. 03docs.bmad-method.org/explanation/build/
  4. 04docs.bmad-method.org/reference/core-tools/#bmad-review
  5. 05docs.bmad-method.org/reference/testing/
  6. 06github.blog/ai-and-ml/generative-ai/spec-driven-development-with-ai-get-started-with-a-new-open-source-toolkit/
  7. 07github.com/addyosmani/agent-skills
  8. 08github.com/bmad-code-org/bmad-method
  9. 09github.com/bmad-code-org/BMAD-METHOD/tree/main/src/bmm-skills/plan/bmad-document-project
  10. 10github.com/Fission-AI/OpenSpec
  11. 11github.com/github/spec-kit
  12. 12github.com/github/spec-kit/blob/main/spec-driven.md
  13. 13github.github.io/spec-kit/community/extensions.html
  14. 14kiro.dev/
08Verification and Quality Gates55 links
  1. 01arxiv.org/abs/2310.13548
  2. 02blog.cloudflare.com/ai-code-review/
  3. 03codeintelligently.com/blog/architecture-fitness-functions-testing
  4. 04docs.astral.sh/ruff/
  5. 05docs.dynatrace.com/docs/deliver/service-level-objectives
  6. 06docs.github.com/en/code-security/concepts/supply-chain-security/dependabot-version-updates
  7. 07docs.renovatebot.com/
  8. 08dora.dev/research/
  9. 09en.wikipedia.org/wiki/Theory_of_constraints
  10. 10engineering.fb.com/2025/09/30/security/llms-are-the-key-to-mutation-testing-and-better-compliance/
  11. 11eslint.org/
  12. 12fast-check.dev/
  13. 13fossa.com/
  14. 14genai.owasp.org/resource/owasp-top-10-for-llm-applications-2025/
  15. 15github.com/boxed/mutmut
  16. 16github.com/dequelabs/axe-core
  17. 17github.com/gitleaks/gitleaks
  18. 18github.com/GoogleChrome/lighthouse-ci
  19. 19github.com/HolmesGPT/holmesgpt
  20. 20github.com/jendrikseipp/vulture
  21. 21github.com/microsoft/pyright
  22. 22github.com/ossf/scorecard
  23. 23github.com/semgrep/semgrep
  24. 24github.com/sverweij/dependency-cruiser
  25. 25github.com/The-PR-Agent/pr-agent
  26. 26golangci-lint.run/
  27. 27google.github.io/eng-practices/review/developer/small-cls.html
  28. 28grafana.com/products/cloud/ai-observability/
  29. 29hypothesis.readthedocs.io/en/latest/
  30. 30knip.dev/
  31. 31martinfowler.com/articles/harness-engineering.html
  32. 32mypy-lang.org/
  33. 33opentelemetry.io/
  34. 34owasp.org/www-project-top-ten/
  35. 35pact.io/
  36. 36pitest.org/
  37. 37pkg.go.dev/cmd/gofmt
  38. 38prettier.io/
  39. 39sentry.io/product/seer/
  40. 40slsa.dev/
  41. 41sre.google/workbook/alerting-on-slos/
  42. 42sre.google/workbook/canarying-releases/
  43. 43stryker-mutator.io/
  44. 44trivy.dev/
  45. 45www.archunit.org/
  46. 46www.checkov.io/
  47. 47www.coderabbit.ai/
  48. 48www.cve.org/
  49. 49www.dash0.com/agent0
  50. 50www.datadoghq.com/product/ai/bits-investigation/
  51. 51www.infoq.com/news/2026/04/claude-code-review/
  52. 52www.ox.security/blog/static-application-security-sast-tools/
  53. 53www.sigstore.dev/
  54. 54www.sonarsource.com/products/sonarqube/
  55. 55www.typescriptlang.org/tsconfig/#strict
09Agent Orchestration Patterns14 links
  1. 01addyosmani.com/blog/code-agent-orchestra/
  2. 02arxiv.org/abs/2503.10657
  3. 03arxiv.org/abs/2603.04445
  4. 04code.claude.com/docs/en/workflows
  5. 05docs.github.com/en/copilot/concepts/agents/copilot-cli/context-management
  6. 06factory.ai/news/software-factory
  7. 07ghuntley.com/ralph/
  8. 08git-scm.com/docs/git-worktree
  9. 09learn.chatgpt.com/docs/codex-sdk
  10. 10www.anthropic.com/engineering/building-effective-agents
  11. 11www.anthropic.com/engineering/effective-context-engineering-for-ai-agents
  12. 12www.anthropic.com/engineering/multi-agent-research-system
  13. 13www.epam.com/insights/ai/blogs/building-a-dark-factory-with-ai-agents
  14. 14www.mindstudio.ai/blog/what-is-a-dark-factory-ai-agent
10Scaling AI-Native Engineering in Teams15 links
  1. 01addyo.substack.com/p/avoiding-skill-atrophy-in-the-age
  2. 02ainativesoftware.engineering/canvas
  3. 03docs.github.com/en/copilot/tutorials/roll-out-at-scale/enable-developers/drive-adoption
  4. 04dora.dev/research/2025/dora-report/
  5. 05en.wikipedia.org/wiki/Business_model_canvas
  6. 06getdx.com/research/measuring-developer-productivity-with-the-dx-core-4/
  7. 07github.com/antirez/ds4
  8. 08lanziani.com/posts/2025/10/skeptical-to-believer/
  9. 09survey.stackoverflow.co/2025/ai
  10. 10www.bain.com/insights/from-pilots-to-payoff-generative-ai-in-software-development-technology-report-2025/
  11. 11www.digitalapplied.com/blog/change-management-ai-adoption-2026-overcoming-resistance-playbook
  12. 12www.faros.ai/research/ai-acceleration-whiplash
  13. 13www.oreilly.com/library/view/scaling-ai-adoption/0642572246563/
  14. 14www.paulmduvall.com/sharing-ai-development-rules-across-your-organization/
  15. 15www.sei.cmu.edu/library/ai-adoption-maturity-model/
11AI-Native in Practice at Cogwheel1 link
  1. 01github.com/vercel-labs/agent-skills/tree/main/skills/react-best-practices

Links rot. If one of these is dead or has moved, it will be corrected on the updates page. This list was generated from manuscript commit 9248692.

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